Installing

pip

nextflow.py can be installed using pip:

$ pip install nextflowpy

If you get permission errors, try using sudo:

$ sudo pip install nextflowpy

Development

The repository for nextflow.py, containing the most recent iteration, can be found here. To clone the nextflow.py repository directly from there, use:

$ git clone git://github.com/goodwright/nextflow.py.git

Nextflow

nextflow.py requires the Nextflow executable to be installed and in your PATH. Instructions for installing Nextflow can be found at their website.

Testing

To test a local version of nextflow.py, cd to the nextflow.py directory and run:

$ python -m unittest discover tests

You can opt to only run unit tests or integration tests:

$ python -m unittest discover tests.unit
$ python -m unittest discover tests.integration